STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP61444.1Asp/Glu/hydantoin racemase. (229 aa)    
Predicted Functional Partners:
SFP61463.1
Dihydropyrimidinase.
 
  
  0.896
SFP09637.1
Polysaccharide deacetylase.
 
  
  0.875
SFP58385.1
Putative urate catabolism protein.
 
  
  0.871
SFP61485.1
Predicted amidohydrolase.
 
     0.845
SFQ69900.1
Asp/Glu/hydantoin racemase.
  
  
 
0.833
SFP61424.1
Aspartate racemase.
       0.773
SFP61505.1
Polar amino acid transport system permease protein.
 
     0.614
SFP61525.1
Polar amino acid transport system permease protein.
 
     0.590
SFP61574.1
Polar amino acid transport system substrate-binding protein.
 
     0.590
SFP30827.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.551
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.