STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ54542.13-methyl-2-oxobutanoate hydroxymethyltransferase. (304 aa)    
Predicted Functional Partners:
SFQ54534.1
Pantoate--beta-alanine ligase.
 
 0.999
SFQ57662.1
2-dehydropantoate 2-reductase.
   
 0.946
SFP55928.1
2-dehydropantoate 2-reductase.
    
 0.923
SFP75648.1
Dihydroxy-acid dehydratase.
     
 0.922
SFP71432.1
2-dehydropantoate 2-reductase.
    
 0.887
SFP16405.1
Branched-chain amino acid aminotransferase.
    
 0.882
SFO58781.1
2-dehydropantoate 2-reductase.
    
 0.840
SFP17031.1
2-dehydropantoate 2-reductase.
    
 0.840
SFQ28963.1
2-dehydropantoate 2-reductase.
    
 0.839
SFP16962.1
Dihydroxy-acid dehydratase.
     
 0.800
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.