STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ57980.1Long-chain acyl-CoA synthetase. (618 aa)    
Predicted Functional Partners:
SFQ57960.1
Branched-chain amino acid transport system ATP-binding protein.
 
    0.851
SFQ57948.1
Branched-chain amino acid transport system permease protein.
 
    0.836
SFP45625.1
Hypothetical protein.
    
 0.824
SFQ39590.1
Hypothetical protein.
    
 0.824
SFQ57972.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (TC 3.A.1.4.-).
 
    0.815
SFP29453.1
Protein of unknown function.
    
 0.805
SFO55150.1
Hypothetical protein.
   
 0.788
SFO55991.1
Hypothetical protein.
   
 0.788
SFO56928.1
Hypothetical protein.
   
 0.788
SFQ33675.1
TonB C terminal.
   
 0.788
Your Current Organism:
Variovorax sp. OK605
NCBI taxonomy Id: 1855317
Other names: V. sp. OK605
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.