STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP38958.1Hypothetical protein. (153 aa)    
Predicted Functional Partners:
SEP38979.1
Hypothetical protein.
 
     0.755
SEP38969.1
Hypothetical protein.
       0.723
SEO56630.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.673
SEO53049.1
Major capsid protein, N4-gp56 family.
  
     0.637
SEO53240.1
Hypothetical protein.
  
     0.606
SEP39413.1
NAD(P)-binding Rossmann-like domain-containing protein.
  
     0.599
SEO77073.1
Hypothetical protein.
  
     0.591
SEO67556.1
Hypothetical protein.
  
     0.537
SEO63744.1
Hypothetical protein.
  
     0.516
SEO86988.1
TIR domain-containing protein.
  
     0.492
Your Current Organism:
Nitrosovibrio sp. Nv6
NCBI taxonomy Id: 1855340
Other names: N. sp. Nv6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.