SEC44449.1 protein (Streptomyces sp. 21311) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEC44449.1

Protein of unknown function. (180 aa)

Predicted Functional Partners:

SED29477.1

0.761

SEB62300.1

0.614

SEC44498.1

0.602

SED39357.1

0.600

SED29374.1

0.572

SED42022.1

0.563

SEE48160.1

0.496

SED29618.1

0.475

SED23600.1

0.468

SEC44551.1

0.435

Your Current Organism:

Streptomyces sp. 21311

NCBI taxonomy Id: 1855346
Other names: S. sp. 2131.1, Streptomyces sp. 2131.1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEB62300.1	SEC44449.1	SAMN05216483_0032	SAMN05216483_1717	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	Protein of unknown function.	0.614
SEB62300.1	SED23600.1	SAMN05216483_0032	SAMN05216483_3399	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	Aspartate kinase; Belongs to the aspartokinase family.	0.468
SEC44449.1	SEB62300.1	SAMN05216483_1717	SAMN05216483_0032	Protein of unknown function.	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	0.614
SEC44449.1	SEC44498.1	SAMN05216483_1717	SAMN05216483_1718	Protein of unknown function.	Thioredoxin reductase.	0.602
SEC44449.1	SEC44551.1	SAMN05216483_1717	SAMN05216483_1719	Protein of unknown function.	Hypothetical protein.	0.435
SEC44449.1	SED23600.1	SAMN05216483_1717	SAMN05216483_3399	Protein of unknown function.	Aspartate kinase; Belongs to the aspartokinase family.	0.468
SEC44449.1	SED29374.1	SAMN05216483_1717	SAMN05216483_3533	Protein of unknown function.	Helix-turn-helix domain-containing protein.	0.572
SEC44449.1	SED29477.1	SAMN05216483_1717	SAMN05216483_3535	Protein of unknown function.	Transcriptional regulator, PadR family.	0.761
SEC44449.1	SED29618.1	SAMN05216483_1717	SAMN05216483_3538	Protein of unknown function.	DNA-binding transcriptional regulator, MerR family.	0.475
SEC44449.1	SED39357.1	SAMN05216483_1717	SAMN05216483_3745	Protein of unknown function.	Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.	0.600
SEC44449.1	SED42022.1	SAMN05216483_1717	SAMN05216483_3802	Protein of unknown function.	Protein of unknown function.	0.563
SEC44449.1	SEE48160.1	SAMN05216483_1717	SAMN05216483_6355	Protein of unknown function.	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	0.496
SEC44498.1	SEC44449.1	SAMN05216483_1718	SAMN05216483_1717	Thioredoxin reductase.	Protein of unknown function.	0.602
SEC44498.1	SEC44551.1	SAMN05216483_1718	SAMN05216483_1719	Thioredoxin reductase.	Hypothetical protein.	0.553
SEC44551.1	SEC44449.1	SAMN05216483_1719	SAMN05216483_1717	Hypothetical protein.	Protein of unknown function.	0.435
SEC44551.1	SEC44498.1	SAMN05216483_1719	SAMN05216483_1718	Hypothetical protein.	Thioredoxin reductase.	0.553
SED23600.1	SEB62300.1	SAMN05216483_3399	SAMN05216483_0032	Aspartate kinase; Belongs to the aspartokinase family.	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	0.468
SED23600.1	SEC44449.1	SAMN05216483_3399	SAMN05216483_1717	Aspartate kinase; Belongs to the aspartokinase family.	Protein of unknown function.	0.468
SED23600.1	SED42022.1	SAMN05216483_3399	SAMN05216483_3802	Aspartate kinase; Belongs to the aspartokinase family.	Protein of unknown function.	0.468
SED23600.1	SEE48160.1	SAMN05216483_3399	SAMN05216483_6355	Aspartate kinase; Belongs to the aspartokinase family.	Uncharacterized damage-inducible protein DinB (forms a four-helix bundle); Manually curated.	0.468