Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEC18329.1 | SEC55255.1 | SAMN05216483_1223 | SAMN05216483_1924 | Hypothetical protein. | Transcriptional regulator, MarR family. | 0.485 |
SEC55255.1 | SEC18329.1 | SAMN05216483_1924 | SAMN05216483_1223 | Transcriptional regulator, MarR family. | Hypothetical protein. | 0.485 |
SEC55255.1 | SEC55301.1 | SAMN05216483_1924 | SAMN05216483_1925 | Transcriptional regulator, MarR family. | Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family. | 0.508 |
SEC55255.1 | SEC97576.1 | SAMN05216483_1924 | SAMN05216483_2806 | Transcriptional regulator, MarR family. | PTS system IIB component, Glc family /PTS system IIC component, Glc family. | 0.471 |
SEC55255.1 | SED05987.1 | SAMN05216483_1924 | SAMN05216483_3027 | Transcriptional regulator, MarR family. | Transcriptional regulator, MarR family. | 0.698 |
SEC55255.1 | lon | SAMN05216483_1924 | SAMN05216483_1927 | Transcriptional regulator, MarR family. | ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.572 |
SEC55301.1 | SEC55255.1 | SAMN05216483_1925 | SAMN05216483_1924 | Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family. | Transcriptional regulator, MarR family. | 0.508 |
SEC97576.1 | SEC55255.1 | SAMN05216483_2806 | SAMN05216483_1924 | PTS system IIB component, Glc family /PTS system IIC component, Glc family. | Transcriptional regulator, MarR family. | 0.471 |
SEC97576.1 | SED05987.1 | SAMN05216483_2806 | SAMN05216483_3027 | PTS system IIB component, Glc family /PTS system IIC component, Glc family. | Transcriptional regulator, MarR family. | 0.471 |
SED05987.1 | SEC55255.1 | SAMN05216483_3027 | SAMN05216483_1924 | Transcriptional regulator, MarR family. | Transcriptional regulator, MarR family. | 0.698 |
SED05987.1 | SEC97576.1 | SAMN05216483_3027 | SAMN05216483_2806 | Transcriptional regulator, MarR family. | PTS system IIB component, Glc family /PTS system IIC component, Glc family. | 0.471 |
lon | SEC55255.1 | SAMN05216483_1927 | SAMN05216483_1924 | ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | Transcriptional regulator, MarR family. | 0.572 |