STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE29721.1Sugar-specific transcriptional regulator TrmB. (323 aa)    
Predicted Functional Partners:
SEC35130.1
Signal transduction histidine kinase.
   
 0.994
SED98478.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.644
SED66614.1
Signal transduction histidine kinase.
   
  0.587
SED10089.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.576
SED74002.1
GAF domain-containing protein.
  
  0.576
SED45719.1
Hypothetical protein.
  
  
  0.519
SED27491.1
Hypothetical protein.
  
     0.518
SED26924.1
Cupin superfamily protein.
  
     0.515
SEC46362.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.499
SED07045.1
Regulatory protein, luxR family.
 
 
  0.498
Your Current Organism:
Streptomyces sp. 21311
NCBI taxonomy Id: 1855346
Other names: S. sp. 2131.1, Streptomyces sp. 2131.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.