STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE18897.1Serine phosphatase RsbU, regulator of sigma subunit. (858 aa)    
Predicted Functional Partners:
SED86310.1
Signal transduction histidine kinase.
  
 0.987
SEC15108.1
PAS domain S-box-containing protein.
 
0.980
SEE66736.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 
0.980
SED89465.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
0.957
SEE04890.1
Hypothetical protein.
  
 0.899
SED80845.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
  
 0.850
SEE23011.1
PAS domain S-box-containing protein.
 
0.847
SEC22646.1
PAS domain S-box-containing protein.
 
0.846
SEC30163.1
PAS domain S-box-containing protein.
 
0.846
SEC41518.1
GAF domain-containing protein.
 
0.846
Your Current Organism:
Streptomyces sp. 22311
NCBI taxonomy Id: 1855347
Other names: S. sp. 2231.1, Streptomyces sp. 2231.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.