STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF13138.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (266 aa)    
Predicted Functional Partners:
SEF13152.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
  0.900
SEF13133.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
   
 0.885
SEF13145.1
Glycosyl transferase family 2.
 
     0.861
SEF13126.1
Glycosyl hydrolases family 39.
  
  
  0.613
SEF14574.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
    
 0.546
SEE33074.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
     
 0.522
SEF02127.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
 
 0.516
SEF03780.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
  0.514
SEE66048.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
  0.448
alc
Allantoicase; Belongs to the allantoicase family.
    
  0.441
Your Current Organism:
Streptomyces sp. Ag109O510
NCBI taxonomy Id: 1855349
Other names: S. sp. Ag109_O5-10, Streptomyces sp. Ag109_O5-10
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