STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDB86104.1Flagellum-specific peptidoglycan hydrolase FlgJ. (208 aa)    
Predicted Functional Partners:
SDB86084.1
ATP-binding cassette, subfamily C, CydD.
       0.775
SDB86094.1
ATP-binding cassette, subfamily C, CydC.
       0.775
SDB92555.1
D-alanyl-D-alanine carboxypeptidase.
   
  0.715
SDB86113.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
       0.583
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.564
SDB86067.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
       0.561
SDB86077.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
       0.561
SDB86133.1
Protein involved in sex pheromone biosynthesis.
       0.539
SDB86057.1
Uncharacterized protein YrzB, UPF0473 family; Belongs to the UPF0473 family.
 
     0.439
Your Current Organism:
Leuconostocaceae bacterium R53105
NCBI taxonomy Id: 1855370
Other names: L. bacterium R-53105, Leuconostocaceae bacterium R-53105
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.