STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW05062.1Hypothetical protein. (379 aa)    
Predicted Functional Partners:
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.868
SDW05004.1
Protein of unknown function.
       0.829
SDW04976.1
Stage V sporulation protein B.
 
     0.820
SDW04953.1
Hypothetical protein.
       0.783
SDW04938.1
Hypothetical protein.
       0.780
SDW05083.1
Phosphate starvation-inducible protein PhoH.
     
 0.778
SDW20832.1
Flagellar hook-associated protein 2.
  
     0.743
SDW54063.1
Hypothetical protein.
  
     0.743
SDW05163.1
Chitobiase/beta-hexosaminidase C-terminal domain-containing protein.
 
     0.735
SDW28952.1
Hook-length control protein FliK.
  
     0.730
Your Current Organism:
Lachnospiraceae bacterium KHCPX20
NCBI taxonomy Id: 1855375
Other names: L. bacterium KHCPX20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.