STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW16669.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
SDW16601.1
Cell wall-associated hydrolase, NlpC family.
       0.780
SDW16650.1
Hypothetical protein.
       0.780
SDW16627.1
Protein of unknown function DUF87.
       0.776
SDW16553.1
Type IV secretory system Conjugative DNA transfer.
       0.732
SDW16581.1
Hypothetical protein.
       0.732
SDW16525.1
Hypothetical protein.
       0.507
SDW16694.1
Repeat domain (List_Bact_rpt).
       0.417
SDW16716.1
Hypothetical protein.
       0.417
SDW16740.1
Hypothetical protein.
       0.417
SDW16761.1
Hypothetical protein.
       0.417
Your Current Organism:
Lachnospiraceae bacterium KHCPX20
NCBI taxonomy Id: 1855375
Other names: L. bacterium KHCPX20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.