STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW23697.1Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose). (159 aa)    
Predicted Functional Partners:
SDW23789.1
Glycosyl transferase family 2.
  
 
 0.758
SDW23720.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.657
SDW23758.1
UDP-galactopyranose mutase.
       0.656
SDW23820.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
       0.651
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
       0.566
SDW62058.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.550
SDW61631.1
Glutamate synthase (ferredoxin).
      
 0.505
SDW23662.1
N-acetylmuramoyl-L-alanine amidase.
       0.497
SDW27754.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.492
SDW36737.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.471
Your Current Organism:
Lachnospiraceae bacterium KHCPX20
NCBI taxonomy Id: 1855375
Other names: L. bacterium KHCPX20
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