STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1-2CRISP-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (331 aa)    
Predicted Functional Partners:
SET30595.1
CRISPR-associated protein Cas2.
 
 
 0.987
SET30494.1
CRISPR-associated protein, Cse3 family.
 
  
 0.943
SET30445.1
CRISPR-associated protein, Cse4 family.
 
  
 0.931
SET30471.1
CRISPR system Cascade subunit CasD.
 
   
 0.918
cas2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
 
 0.908
SET30411.1
CRISPR system Cascade subunit CasB.
 
  
 0.899
SET30386.1
CRISPR-associated protein, Cse1 family.
 
  
 0.898
SET30361.1
CRISPR-associated endonuclease/helicase Cas3.
 
  
 0.859
Your Current Organism:
Olsenella sp. KH3B4
NCBI taxonomy Id: 1855394
Other names: O. sp. KH3B4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.