STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydbMPutative acyl-CoA dehydrogenase YdbM; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern. (385 aa)    
Predicted Functional Partners:
acsA
Acetyl-coenzyme A synthetase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
  
 0.603
cysM
Cysteine synthase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
  
 0.584
katE
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.553
modB_1
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.535
korA
2-oxoglutarate oxidoreductase subunit KorA; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
  
 0.532
xylF
2-hydroxymuconate semialdehyde hydrolase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
 0.529
katA
Catalase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the catalase family.
  
 0.481
icd
Isocitrate dehydrogenase [NADP]; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
 0.478
menE
2-succinylbenzoate--CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
  
  
 0.467
ARQ05728.1
Alpha/beta hydrolase domain-containing family protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
 0.444
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
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