STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rapL_2L-lysine cyclodeaminase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern. (320 aa)    
Predicted Functional Partners:
ARQ06209.1
Sulfite exporter TauE/SafE; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
     0.942
fadM
Proline dehydrogenase 1; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
 
 0.920
proC_1
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.908
proC_2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.908
arg
Arginase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the arginase family.
  
 
 0.906
rocD2
Ornithine aminotransferase 2; Catalyzes the interconversion of ornithine to glutamate semialdehyde.
  
 
 0.904
ARQ06211.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
       0.506
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the ABC transporter superfamily.
       0.457
ARQ06208.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
       0.415
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
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