STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yigZIMPACT family member YigZ; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern. (212 aa)    
Predicted Functional Partners:
ARQ06354.1
DegV domain-containing protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
       0.578
ARQ06356.1
DNA utilization protein GntX; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
    0.465
mfd_1
Transcription-repair-coupling factor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
     
 0.462
yvyD
Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
     
 0.458
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.418
corA_3
Magnesium transport protein CorA; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
    0.411
trmK_1
tRNA (adenine(22)-N(1))-methyltransferase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
    0.400
trmK_2
tRNA (adenine(22)-N(1))-methyltransferase; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
   
    0.400
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
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