STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yocH_1Cell wall-binding protein YocH precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern. (319 aa)    
Predicted Functional Partners:
ARQ07037.1
Glycyl-glycine endopeptidase ALE-1 precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
  
 0.742
ARQ06629.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; penicillin-binding protein 2' homolog MecB.
 
 
 0.577
prkC
Serine/threonine-protein kinase PrkC; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
  
 0.553
ARQ06899.1
Putative CtpA-like serine protease; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the peptidase S41A family.
     
 0.524
dinG
Hypothetical protein; 3'-5' exonuclease.
     
 0.504
lytC
N-acetylmuramoyl-L-alanine amidase LytC precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
  
 0.497
mltG
Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.490
sle1_1
N-acetylmuramoyl-L-alanine amidase sle1 precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
    
 0.466
atl_1
Bifunctional autolysin precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
  
 0.461
rodA
Rod shape-determining protein RodA; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the SEDS family.
 
  
 0.455
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
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