STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCCell shape-determining protein MreC precursor; Involved in formation and maintenance of cell shape. (287 aa)    
Predicted Functional Partners:
mreD
Rod shape-determining protein MreD; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
  
 
 0.988
ARQ07126.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; penicillin-binding protein 2' homolog MecB.
 
 
 0.863
ARQ06629.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; penicillin-binding protein 2' homolog MecB.
 
 
 0.789
rodA
Rod shape-determining protein RodA; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the SEDS family.
 
  
 0.743
pbpH
Penicillin-binding protein H; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
 
 0.709
ybbD
Putative lipoprotein YbbD precursor; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
     
 0.685
radC_2
RadC-like JAB domain-containing family protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern; Belongs to the UPF0758 family.
  
  
 0.685
ARQ06757.1
Cytoskeletal protein RodZ; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
 
 
 
 0.679
secD
Bifunctional preprotein translocase subunit SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.677
ARQ07262.1
Hypothetical protein; Bacteria and source DNA available from Institute of Veterinary Bacteriology, University Bern.
       0.664
Your Current Organism:
Macrococcus canis
NCBI taxonomy Id: 1855823
Other names: CCM 8748, CCOS 969, CCOS:969, CCUG 68920, DSM 101690, M. canis, Macrococcus canis Gobeli Brawand et al. 2017, Macrococcus sp. KM45013, strain KM 45013
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