STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_00161RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
LuPra_00162
Putative transmembrane transcriptional regulator (Anti-sigma factor).
       0.773
fprA2
H(2)O-forming NADH oxidase.
       0.737
axe1-6A_1
Carbohydrate acetyl esterase/feruloyl esterase.
  
    0.516
ptlI
Pentalenene oxygenase; Belongs to the cytochrome P450 family.
       0.514
LuPra_02965
B12-binding domain/radical SAM domain protein, family.
  
     0.497
LuPra_00157
Ribonuclease Z.
       0.474
LuPra_02966
Argininosuccinate lyase.
  
     0.454
LuPra_05866
Putative membrane protein.
  
     0.450
wbbL_5
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
  
     0.413
LuPra_01756
Uncharacterized protein.
  
     0.402
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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