STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimB_1GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase. (448 aa)    
Predicted Functional Partners:
mshA_1
D-inositol 3-phosphate glycosyltransferase.
     0.969
LuPra_00530
Lipopolysaccharide 1,2-N-acetylglucosaminetransferase.
     0.963
LuPra_00464
Glycogen synthase, Corynebacterium family.
 
     0.950
kanF_1
2-deoxystreptamine glucosyltransferase.
 
    
0.803
LuPra_00531
Uncharacterized protein.
       0.762
mshA_3
D-inositol 3-phosphate glycosyltransferase.
  
     0.743
kanF_2
2-deoxystreptamine glucosyltransferase.
  
     0.730
LuPra_03616
D-inositol-3-phosphate glycosyltransferase.
  
     0.706
LuPra_04956
Methionine biosynthesis protein MetW.
  
     0.702
LuPra_00532
Decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
       0.609
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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