STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaR_1Transcriptional regulatory protein LiaR. (214 aa)    
Predicted Functional Partners:
liaS_2
Sensor histidine kinase LiaS.
 
 
 0.922
desK
Sensor histidine kinase DesK.
 
 
 0.850
liaS_1
Sensor histidine kinase LiaS.
 
 
 0.841
nreB_2
Oxygen sensor histidine kinase NreB.
 
 
 0.840
liaS_3
Sensor histidine kinase LiaS.
 
 
 0.831
rcsC_1
Sensor kinase protein RcsC.
   
 
 0.824
barA_5
Histidine kinase.
  
 
 0.805
vraR_1
Response regulator protein VraR.
  
     0.774
liaR_3
Transcriptional regulatory protein LiaR.
  
     0.764
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.764
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.