STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_00956Common central domain of tyrosinase. (138 aa)    
Predicted Functional Partners:
LuPra_00955
Common central domain of tyrosinase.
      0.943
LuPra_00954
Uncharacterized protein.
      0.941
ddc_1
L-2,4-diaminobutyrate decarboxylase.
     
  0.900
pat
Phenylalanine aminotransferase.
     
  0.900
melC2
Tyrosinase.
     
  0.900
LuPra_03702
Aspartate aminotransferase.
     
  0.900
tpl
Tyrosine phenol-lyase.
     
  0.900
hisC_1
Histidinol-phosphate aminotransferase.
     
  0.900
ddc_2
L-2,4-diaminobutyrate decarboxylase.
     
  0.900
hisC_2
Histidinol-phosphate aminotransferase.
     
  0.900
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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