STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxlF_2Putative ABC transporter ATP-binding protein YxlF. (232 aa)    
Predicted Functional Partners:
LuPra_02011
Nitrous oxide reductase family maturation protein NosD.
 
 0.874
ytrB
ABC transporter ATP-binding protein YtrB.
 
    
0.803
ybhS
Transport permease protein.
  
 0.757
macB_39
Macrolide export ATP-binding/permease protein MacB.
  
     0.707
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
     0.688
LuPra_02010
Uncharacterized protein.
 
 
 0.663
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.608
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
     0.605
opuCA
Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA.
 
    
0.591
nosZ
Nitrous-oxide reductase.
 
 
 0.583
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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