STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_02015DUF1080 domain-containing protein. (292 aa)    
Predicted Functional Partners:
fnr
Fumarate and nitrate reduction regulatory protein.
       0.773
LuPra_03103
Putative transporter.
 
     0.679
LuPra_01516
L-fucose transporter.
 
     0.653
LuPra_01468
Trehalose utilization.
  
     0.608
LuPra_05223
DUF1080 domain-containing protein.
 
     0.598
LuPra_03226
DUF1080 domain-containing protein.
 
     0.543
LuPra_04353
DUF1080 domain-containing protein.
  
     0.542
LuPra_02014
DUF1080 domain-containing protein.
  
     0.509
LuPra_01062
Putative membrane-bound dehydrogenase domain protein.
 
     0.507
xynZ
Endo-1,4-beta-xylanase Z.
  
     0.497
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.