STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbU_2Phosphoserine phosphatase RsbU. (470 aa)    
Predicted Functional Partners:
btrV
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.875
rsbW
Serine-protein kinase RsbW.
 
 
 0.858
rcsC_1
Sensor kinase protein RcsC.
  
 0.846
spoIIAB
Anti-sigma F factor.
 
 
 0.821
rsbV
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.795
spoIIQ_2
Stage II sporulation protein Q.
   
    0.732
LuPra_02379
Uncharacterized protein.
       0.693
spoIIAA
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.674
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.672
fliM
Flagellar motor switch protein FliM.
  
    0.523
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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