STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrrB_3TPR repeat-containing protein YrrB. (514 aa)    
Predicted Functional Partners:
LuPra_02588
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
    
0.793
LuPra_02589
ASPIC and UnbV.
  
   0.785
LuPra_05608
Putative PEP-CTERM system TPR-repeat lipoprotein.
  
     0.752
LuPra_05868
Lipoprotein NlpI.
  
     0.747
LuPra_00874
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.744
LuPra_02587
ASPIC and UnbV.
  
   0.724
LuPra_05833
Putative PEP-CTERM system TPR-repeat lipoprotein.
  
     0.711
LuPra_05516
Putative PEP-CTERM system TPR-repeat lipoprotein.
  
     0.652
LuPra_03846
Tetratricopeptide repeat protein.
  
     0.633
LuPra_02061
Invasion protein regulator.
  
     0.630
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.