STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gno_2Gluconate 5-dehydrogenase. (259 aa)    
Predicted Functional Partners:
afr_6
1,5-anhydro-D-fructose reductase.
  
 
  0.914
xyoA
Putative xylitol oxidase.
   
  0.905
xylA_2
Xylose isomerase.
     
 0.901
LuPra_02632
NTP_transf_9 domain-containing protein.
       0.705
fabG_10
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
     0.701
xecD_3
2-(R)-hydroxypropyl-CoM dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.667
fabG_6
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
     0.638
gno_5
Gluconate 5-dehydrogenase.
  
 
   0.621
gdhB_1
Glucose 1-dehydrogenase B.
  
     0.619
budC
Diacetyl reductase [(S)-acetoin forming]; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.578
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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