STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_02708ABC-type transport system involved in multi-copper enzyme maturation, permease component. (1206 aa)    
Predicted Functional Partners:
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
 
 
   0.948
LuPra_03693
D-alanine--D-alanine ligase.
  
   
 0.583
LuPra_01887
TPR_REGION domain-containing protein.
  
     0.566
blaR1_2
Regulatory protein BlaR1.
  
     0.545
LuPra_01352
Uncharacterized protein.
  
     0.537
LuPra_05587
DinB superfamily protein.
  
     0.494
LuPra_00052
Translocation protein TolB.
  
     0.481
LuPra_02881
Uncharacterized protein.
  
     0.465
LuPra_06109
Uncharacterized protein.
  
     0.423
blaR1_3
Regulatory protein BlaR1.
  
     0.416
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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