STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rspA_2Starvation-sensing protein RspA. (402 aa)    
Predicted Functional Partners:
uxaA
Altronate dehydratase.
 
 
 0.929
rspA_1
Starvation-sensing protein RspA.
  
  
 
0.908
gno_1
Gluconate 5-dehydrogenase.
     
  0.900
uxuA_1
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
  0.900
uxuA_2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
    
  0.900
kdgK
2-dehydro-3-deoxygluconokinase.
    
 0.891
LuPra_00225
Aminoimidazole riboside kinase.
    
 0.801
gndA
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
  0.800
hxlA
3-hexulose-6-phosphate synthase.
     
  0.800
rpiB
Ribose-5-phosphate isomerase B.
     
  0.800
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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