STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_02971Uncharacterized protein. (1538 aa)    
Predicted Functional Partners:
bamA_1
Outer membrane protein Omp85.
 
   
 0.932
rssA_2
NTE family protein RssA.
  
 
 0.796
LuPra_01167
Uncharacterized protein.
  
 
 0.787
bamD
Outer membrane protein assembly factor BamD.
  
   
 0.525
LuPra_02969
Stress-induced bacterial acidophilic repeat motif.
       0.504
LuPra_05454
NIPSNAP domain-containing protein.
   
    0.501
mltB
Membrane-bound lytic murein transglycosylase B.
  
    0.494
LuPra_02404
Uncharacterized protein.
   
    0.487
ntrY
Two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY.
  
     0.457
lptD
Organic solvent tolerance protein.
 
   
 0.456
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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