STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03027Metal-dependent hydrolase. (172 aa)    
Predicted Functional Partners:
LuPra_03692
Bacillithiol system oxidoreductase, YphP/YqiW family; Belongs to the UPF0403 family.
  
     0.741
yfiT_1
Metal-dependent hydrolase YfiT.
  
     0.726
LuPra_00443
Uncharacterized protein.
  
     0.721
LuPra_03874
Uncharacterized protein.
  
     0.705
LuPra_01781
Uncharacterized protein.
  
     0.696
LuPra_02157
Bacillithiol system protein YtxJ.
  
     0.646
LuPra_02997
Uncharacterized protein.
  
     0.643
lon1_1
Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
       0.489
pimB_3
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase.
  
     0.461
LuPra_04702
Putative integral membrane protein linked to a cation pump.
  
     0.439
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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