STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03028Uncharacterized protein. (248 aa)    
Predicted Functional Partners:
LuPra_00228
Uncharacterized protein.
  
  
 
0.924
LuPra_00040
56kDa selenium binding protein (SBP56).
     
  0.900
yitJ_2
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
 
  
  0.834
LuPra_00409
Thiosulfate sulfurtransferase.
    
  0.803
yitJ_1
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
    
  0.803
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.803
rhdA_1
Thiosulfate sulfurtransferase.
    
  0.803
rhdA_2
Thiosulfate sulfurtransferase.
    
  0.803
xecA1
2-hydroxypropyl-CoM lyase.
     
  0.800
metE_1
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase.
     
  0.800
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.