STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03134Transposase DDE domain protein. (360 aa)    
Predicted Functional Partners:
LuPra_00839
Transposase DDE domain protein.
  
     0.773
LuPra_01523
Transposase DDE domain protein.
  
     0.773
LuPra_02397
annotation not available
  
     0.773
LuPra_05105
annotation not available
  
     0.773
LuPra_06259
Transposase DDE domain protein.
  
     0.773
LuPra_02788
Transposase DDE domain protein.
  
     0.772
bbsF
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.
       0.555
LuPra_03133
UPF0234 protein LuPra_03133; Belongs to the UPF0234 family.
       0.411
LuPra_03136
Putative restriction endonuclease.
       0.405
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.