STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03178Putative PEP-CTERM system TPR-repeat lipoprotein. (535 aa)    
Predicted Functional Partners:
LuPra_03177
TonB_C domain-containing protein.
   
   0.627
LuPra_02482
Uncharacterized protein.
  
     0.598
LuPra_01215
Cyclic nucleotide-binding domain protein.
  
 
   0.591
LuPra_05868
Lipoprotein NlpI.
  
     0.566
LuPra_02481
Phosphotransferase enzyme family protein.
  
     0.532
blaI_2
Regulatory protein BlaI.
 
     0.516
LuPra_02721
Glutaryl-7-aminocephalosporanic-acid acylase.
  
     0.510
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.505
yrrB_4
TPR repeat-containing protein YrrB.
  
     0.482
LuPra_03176
Uncharacterized protein.
   
   0.476
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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