STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03514Protein TolA. (267 aa)    
Predicted Functional Partners:
exbD_1
Biopolymer transport protein ExbD.
 
 
 0.927
exbB_1
Biopolymer transport protein ExbB.
 
 
 0.900
LuPra_03515
Translocation protein TolB.
 
 
   0.860
pal_1
Peptidoglycan-associated protein; Belongs to the Pal lipoprotein family.
 
 
 
 0.719
LuPra_03517
Tol-pal system protein YbgF.
 
   
 0.693
exbD_2
Biopolymer transport protein ExbD.
 
 
 0.691
exbD_3
Biopolymer transport protein ExbD.
 
 
 0.664
exbB_2
Biopolymer transport protein ExbB.
 
 
 0.638
LuPra_03509
BFN domain-containing protein.
 
     0.538
pal
Peptidoglycan-associated protein; Belongs to the Pal lipoprotein family.
 
 
 
 0.485
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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