STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgCAcyl-CoA thioester hydrolase YbgC. (132 aa)    
Predicted Functional Partners:
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.799
prkC_34
Serine/threonine-protein kinase PrkC.
  
    0.798
strE
dTDP-glucose 4,6-dehydratase.
   
   0.786
bamD
Outer membrane protein assembly factor BamD.
       0.773
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.749
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.709
lcfB_4
Long-chain-fatty-acid--CoA ligase.
  
 
 0.625
gdhB_3
NAD-specific glutamate dehydrogenase.
  
    0.595
rsmB
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
    0.576
LuPra_05572
Acyl carrier protein.
 
 
 0.542
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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