STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_03801Uncharacterized protein. (487 aa)    
Predicted Functional Partners:
LuPra_03802
Planctomycete cytochrome C.
 
     0.946
LuPra_05436
Putative membrane protein.
 
     0.783
LuPra_05668
Putative membrane protein.
 
     0.782
LuPra_00235
Planctomycete cytochrome C.
  
     0.775
LuPra_01194
Planctomycete cytochrome C.
  
     0.775
LuPra_04373
NHL repeat.
  
     0.775
LuPra_05666
Planctomycete cytochrome C.
  
     0.775
LuPra_01484
Planctomycete cytochrome C.
  
     0.770
LuPra_01948
Putative membrane-bound dehydrogenase domain protein.
  
     0.706
LuPra_05037
Putative membrane-bound dehydrogenase domain protein.
  
     0.660
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.