STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catI3-oxoadipate CoA-transferase subunit A. (275 aa)    
Predicted Functional Partners:
catJ
3-oxoadipate CoA-transferase subunit B.
 0.999
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.968
gatA_6
Glutamyl-tRNA(Gln) amidotransferase subunit A.
    
  0.923
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A.
     
  0.900
gatA_3
Glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
     
  0.900
pcaH_1
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.867
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
  
 0.858
catD
3-oxoadipate enol-lactonase 2.
 
  
 0.837
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
 
  
 0.795
pobA
P-hydroxybenzoate hydroxylase.
 
   
 0.763
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.