STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
czcB_3Cation efflux system protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (529 aa)    
Predicted Functional Partners:
cusA
Cation efflux system protein CusA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.964
LuPra_04038
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   0.898
czcA_1
Cation efflux system protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.847
mdtB_1
Multidrug transporter MdtB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.742
czcA_2
Cation efflux system protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.733
mdtC_3
Multidrug transporter MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.721
czcC
Cation efflux system protein CzcC.
  
   0.719
mdtC_2
Multidrug transporter MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
   0.718
czcB_2
Cation efflux system protein CzcB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.712
macA_2
Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.622
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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