STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_04129Transcriptional regulator, Acidobacterial, PadR-family. (117 aa)    
Predicted Functional Partners:
macB_45
Macrolide export ATP-binding/permease protein MacB.
       0.773
LuPra_01756
Uncharacterized protein.
  
     0.505
LuPra_04128
Uncharacterized protein.
       0.486
LuPra_00150
Xylose isomerase-like TIM barrel.
  
     0.445
ccoP_1
Cytochrome c oxidase subunit III.
  
     0.444
LuPra_01938
Xylose isomerase-like TIM barrel.
  
     0.430
LuPra_02336
Xylose isomerase-like TIM barrel.
  
     0.427
LuPra_00457
Enterobactin/ferric enterobactin esterase.
  
     0.418
LuPra_01206
Cardiolipin synthetase.
  
     0.409
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.