STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_04316SagB-type dehydrogenase domain protein. (397 aa)    
Predicted Functional Partners:
LuPra_01667
Putative methanogenesis marker protein 1.
 
  
 0.882
LuPra_04317
Uncharacterized protein.
       0.773
ybhR_1
Inner membrane transport permease YbhR.
  
  
 0.763
ybhS
Transport permease protein.
  
  
 0.763
LuPra_03228
Transport permease protein.
  
  
 0.763
yadH
Transport permease protein.
  
  
 0.763
LuPra_03940
CAAX amino terminal protease self-immunity.
 
  
 0.636
prkC_35
Serine/threonine-protein kinase PrkC.
  
    0.577
LuPra_00939
CAAX amino terminal protease self-immunity.
  
  
 0.573
fosA
Glutathione transferase FosA.
  
  
 0.511
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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