STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_04343Uncharacterized protein. (506 aa)    
Predicted Functional Partners:
LuPra_04342
Putative metal-dependent hydrolase of the TIM-barrel fold protein.
 
     0.859
glsA1
Glutaminase; Belongs to the glutaminase family.
 
    0.828
LuPra_02213
Protein involved in meta-pathway of phenol degradation.
  
     0.649
LuPra_04341
Uncharacterized protein.
       0.566
LuPra_01511
Uncharacterized protein.
  
     0.542
barA_3
Histidine kinase.
 
  
 0.482
LuPra_01382
Salt-induced outer membrane protein.
  
     0.476
LuPra_02278
Uncharacterized protein.
  
     0.465
LuPra_01724
Cyclophil_like2 domain-containing protein.
  
     0.464
LuPra_00052
Translocation protein TolB.
  
 
   0.459
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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