STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yknZ_3Putative ABC transporter permease YknZ. (885 aa)    
Predicted Functional Partners:
macB_31
Macrolide export ATP-binding/permease protein MacB.
  
   0.820
LuPra_02237
Putative efflux pump membrane fusion protein.
  
    0.803
macB_39
Macrolide export ATP-binding/permease protein MacB.
  
   0.803
macB_12
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
   0.792
LuPra_04441
Lineage-specific thermal regulator protein.
       0.773
macA_7
Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.773
macB_42
Macrolide export ATP-binding/permease protein MacB.
  
     0.756
macA_6
Macrolide-specific efflux protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.750
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
  
   0.744
macB_43
Macrolide export ATP-binding/permease protein MacB.
  
   0.728
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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