STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgsA1CDP-diacylglycerol--inositol 3-phosphatidyltransferase. (239 aa)    
Predicted Functional Partners:
pncC
CinA-like protein; Belongs to the CinA family.
  
  
 0.886
LuPra_04211
Cytoskeletal protein RodZ.
  
    0.774
LuPra_04523
Uncharacterized protein.
       0.773
ino1
Inositol-3-phosphate synthase.
 
   
 0.718
uvrC_2
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.636
lcfB_4
Long-chain-fatty-acid--CoA ligase.
 
 
 0.589
LuPra_00056
Uncharacterized protein.
  
     0.540
folD
Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
  
 0.513
LuPra_05581
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
  
     0.480
argS
Arginine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.471
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.