STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_05102TonB-dependent siderophore receptor. (800 aa)    
Predicted Functional Partners:
LuPra_00456
Uncharacterized protein.
  
 
 0.820
LuPra_04237
Uncharacterized protein.
  
 
 0.820
LuPra_05101
Methyltransferase cognate corrinoid protein, Methanosarcina family.
       0.773
cirA_4
Colicin I receptor.
  
  
 0.739
LuPra_04672
Translocation protein TolB.
  
   
 0.701
LuPra_05987
Plug domain-containing protein.
  
   
 0.686
LuPra_05237
Carb-bd_dom_fam9 domain-containing protein.
  
     0.648
LuPra_05665
Uncharacterized protein.
  
     0.646
azoB_3
NAD(P)H azoreductase.
       0.639
LuPra_02182
Carb-bd_dom_fam9 domain-containing protein.
  
     0.619
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.