STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_05452Uncharacterized protein. (157 aa)    
Predicted Functional Partners:
hyi_2
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
     0.592
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.592
LuPra_05453
Uncharacterized protein.
       0.560
nicB_2
Nicotinate dehydrogenase subunit B.
  
     0.416
LuPra_00344
Uncharacterized protein.
  
     0.409
adhB_4
Alcohol dehydrogenase cytochrome c subunit.
  
     0.407
LuPra_02911
Cytochrome c oxidase, cbb3-type, subunit III.
  
     0.402
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.