STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_05542Conjugal transfer proteinc. (445 aa)    
Predicted Functional Partners:
LuPra_05543
Flp pilus assembly protein TadB.
 
  
 0.993
LuPra_05544
Flp pilus assembly protein TadB.
 
  
 0.990
minD_1
Cell division inhibitor MinD.
 
  
 0.979
outD
Pectic enzymes secretion protein OutD; Belongs to the bacterial secretin family.
 
  
 0.978
LuPra_05538
Flp pilus assembly protein CpaB.
 
  
 0.973
LuPra_05540
Helicase/secretion neighborhood TadE-like protein.
 
  
 0.971
LuPra_05537
Flp pilus assembly protein TadG.
 
  
 0.931
LuPra_05536
Flp pilus assembly protein, protease CpaA.
 
   
 0.894
LuPra_05546
Uncharacterized protein.
 
     0.846
LuPra_05532
Uncharacterized protein.
 
     0.823
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.