STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuPra_05798Phosphatidylinositol 3-and 4-kinase. (305 aa)    
Predicted Functional Partners:
LuPra_05668
Putative membrane protein.
    
 0.936
LuPra_03604
Protein ApaG.
  
  
 0.813
LuPra_00125
Peptidyl-prolyl cis-trans isomerase.
    
 0.767
fbp_1
Peptidyl-prolyl cis-trans isomerase.
    
 0.767
fbp_2
Peptidyl-prolyl cis-trans isomerase.
    
 0.767
pknB_15
Serine/threonine-protein kinase PknB.
   
 0.709
LuPra_04076
Uncharacterized protein.
   
 0.704
LuPra_04550
E3 ubiquitin-protein ligase SspH2.
   
 0.704
LuPra_00404
Putative exonuclease, DNA ligase-associated.
   
 
 0.703
LuPra_02325
Ribonuclease.
   
 
 0.703
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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