STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoA_8Alkaline phosphatase. (433 aa)    
Predicted Functional Partners:
LuPra_01443
Calcineurin-like phosphoesterase.
  
     0.722
LuPra_01445
Two component regulator propeller.
  
     0.687
LuPra_06054
Zinc carboxypeptidase.
 
     0.571
LuPra_06056
Uncharacterized protein.
       0.547
LuPra_05995
PhoPQ-activated pathogenicity-related protein.
  
     0.527
LuPra_05038
Neutral/alkaline non-lysosomal ceramidase.
  
     0.518
LuPra_00965
Neutral ceramidase.
  
     0.501
LuPra_06053
Blue-light-activated protein.
     
 0.498
LuPra_01512
Auracyanin-A.
  
     0.481
LuPra_05142
Calcineurin-like phosphoesterase.
  
     0.479
Your Current Organism:
Luteitalea pratensis
NCBI taxonomy Id: 1855912
Other names: Acidobacteria bacterium DSM 100886, Acidobacteria bacterium HEG_-6_39, DSM 100886, KCTC 52215, L. pratensis, Luteitalea pratensis Vieira et al. 2017, strain HEG_-6_39
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